This is often caused by a load balancer disconnecting from your Stardog server (1 minute is a common timeout threshold). Go to the Databases tab and see if the query is still running. If so, load balancer timeout is likely the cause.
If you're using ingress-nginx as your ingress controller, you can edit the timeout with annotations like so:
metadata: annotations: nginx.ingress.kubernetes.io/proxy-connect-timeout: "10800" nginx.ingress.kubernetes.io/proxy-send-timeout: "10800" nginx.ingress.kubernetes.io/proxy-read-timeout: "10800"
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